PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0376s00120.1
Common NameLR48_Vigan08g125800
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 186aa    MW: 20140.7 Da    PI: 8.6111
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0376s00120.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.71.5e-1863113155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       + y+GVr++  +g+WvAeIr+p   + r  r +lg+f ta  Aa a+++a+k+++g
  Vang0376s00120.1  63 CNYRGVRQRT-WGKWVAEIREP---N-RgSRLWLGTFSTAISAALAYDEAAKAMYG 113
                       56*****999.**********8...3.35************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.6E-1363113IPR001471AP2/ERF domain
CDDcd000181.64E-3063123No hitNo description
SuperFamilySSF541717.19E-2164121IPR016177DNA-binding domain
PROSITE profilePS5103221.4364121IPR001471AP2/ERF domain
SMARTSM003807.5E-3764127IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-3164122IPR001471AP2/ERF domain
PRINTSPR003679.6E-106576IPR001471AP2/ERF domain
PRINTSPR003679.6E-1087103IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MLVKDHNRGD GSKSLAYTLA RWKEYNAWLE SSNEAEKAVR KVPAKGSKKG CMKGKGGPEN  60
TLCNYRGVRQ RTWGKWVAEI REPNRGSRLW LGTFSTAISA ALAYDEAAKA MYGSVARLNF  120
PNLEVSALSE ESSRNSPAGS QCGSALVISE SSECMIFPNS SEGDKAKDDD MEGLSLSLSV  180
KHEVV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-1964121563ATERF1
3gcc_A3e-1964121563ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150390.0AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007132590.11e-106hypothetical protein PHAVU_011G107800g
RefseqXP_007132591.11e-106hypothetical protein PHAVU_011G107800g
SwissprotQ8LFR25e-50DRE2C_ARATH; Dehydration-responsive element-binding protein 2C
TrEMBLA0A0L9V5V81e-134A0A0L9V5V8_PHAAN; Uncharacterized protein
TrEMBLA0A0S3SBR21e-134A0A0S3SBR2_PHAAN; Uncharacterized protein
STRINGGLYMA12G11150.34e-90(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF117534106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05410.22e-45DRE-binding protein 2A
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]